2016Q02

[Andreas.Motl]

2016-04-12 [amo]

Misc

• Reactivate SDP adapter as IFI: Connect comfort search beta

Chem

Indigo

Indigo is a universal organic chemistry toolkit.

Indigo: A universal organic chemistry toolkit

Overview Indigo is a universal molecular toolkit that can be used for molecular fingerprinting, substructure search, and molecular visualization. Also capable of performing a molecular similarity search, it is 100% open source and provides enhanced stereochemistry support for end users, as well as a documented API for developers. Indigo is based on a cheminformatics library that incorporates a number of unique algorithms developed by EPAM, as well as some standard algorithms well-known in the c…

Examples

PEO-PPO-PEO
a61m 1 14 16 18
b01d*

tensid or +e

Demo query stacktraces on last result page

2015-09-25 11:59:24,834 INFO  [elmyra.ip.access.epo.services.ops][MainThread] query raw: pn="DE183848C" OR pn="DE226747C" OR pn="DE254644C" OR pn="DE255053C" OR pn="DE273889C" OR pn="DE282221C" OR pn="DE296482C" OR pn="DE307915C" OR pn="DE1536959B" OR
2015-09-25 11:59:24,838 ERROR [elmyra.ip.util.cql.pyparsing.parser][MainThread]
pn="DE183848C" OR pn="DE226747C" OR pn="DE254644C" OR pn="DE255053C" OR pn="DE273889C" OR pn="DE282221C" OR pn="DE296482C" OR pn="DE307915C" OR pn="DE1536959B" OR
                                                                                                                                                                ^
Expected end of text (at char 160), (line:1, col:161)
2015-09-25 11:59:24,839 WARNI [elmyra.ip.access.epo.services][MainThread] CQL parse error: query="pn="DE183848C" OR pn="DE226747C" OR pn="DE254644C" OR pn="DE255053C" OR pn="DE273889C" OR pn="DE282221C" OR pn="DE296482C" OR pn="DE307915C" OR pn="DE1536959B" OR ", reason=Expected end of text (at char 160), (line:1, col:161), Exception was:
Traceback (most recent call last):
  File "/opt/elmyra/patentsearch/sites/prod/.venv27/local/lib/python2.7/site-packages/elmyra/ip/access/epo/services/__init__.py", line 26, in cql_prepare_query
    query_object = CQL(query).polish()
  File "/opt/elmyra/patentsearch/sites/prod/.venv27/local/lib/python2.7/site-packages/elmyra/ip/util/cql/pyparsing/__init__.py", line 13, in __init__
    self.loads(cql)
  File "/opt/elmyra/patentsearch/sites/prod/.venv27/local/lib/python2.7/site-packages/elmyra/ip/util/cql/pyparsing/__init__.py", line 19, in loads
    self.tokens = parse_cql(self.cql, self.logging)
  File "/opt/elmyra/patentsearch/sites/prod/.venv27/local/lib/python2.7/site-packages/elmyra/ip/util/cql/pyparsing/parser.py", line 190, in parse_cql
    tokens = cqlStatement.parseString(cql, parseAll=True)
  File "/opt/elmyra/patentsearch/sites/prod/.venv27/local/lib/python2.7/site-packages/pyparsing.py", line 1111, in parseString
    raise exc
ParseException: Expected end of text (at char 160), (line:1, col:161)